PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472824
Common NameARALYDRAFT_472824
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 290aa    MW: 32011.7 Da    PI: 4.2932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472824genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.34.4e-0981126453
     AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
              GVr ++ +g+++AeI+  +     + ++ +lg++ t+ eA ka++  + ++
  472824  81 VGVRPRP-SGKFAAEIMNpF-----TkTKKWLGTYETPAEAEKAYVDKKVEY 126
             69**999.7*********66.....3499****************9877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.2E-1021276IPR017392AP2/ERF transcription factor ERF/PTI6
SMARTSM003802.7E-478133IPR001471AP2/ERF domain
CDDcd000188.97E-1378119No hitNo description
PROSITE profilePS5103212.61579139IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-1081126IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-1282120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKSFVKPEKD SLLRTVRIIF TDPDATDDSS SSSDEWLPKP RKVKRFVHEI TFLSQVSESS  60
QDRSNAVKTP RKNTRQLKYP VGVRPRPSGK FAAEIMNPFT KTKKWLGTYE TPAEAEKAYV  120
DKKVEYDALA SSGSAVSSSV VSVTSQCLRS PASASVSCVS ADDLSKEKTS LNKDVAASGD  180
DSPMEVFTTF DFSDLKIPDL RFLAAEEDSM VSDANGAELD FDCILSAECN LLLDDYSLLD  240
NDFNISGFEN SLPSELPDCD FTEMERELDD FKFVYADQLT TPPLEFGCV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792810.0AC079281.4 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence.
GenBankAK1191440.0AK119144.1 Arabidopsis thaliana At1g25470 mRNA for unknown protein, complete cds, clone: RAFL21-49-G19.
GenBankBT0052810.0BT005281.1 Arabidopsis thaliana At1g25470 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890688.10.0hypothetical protein ARALYDRAFT_472824
SwissprotQ8GW171e-162EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLD7KAI20.0D7KAI2_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.1__2778__AT1G25470.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.21e-135ERF family protein